Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0781519.1a with 27 members (E3 SUMO-protein ligase)

Eumetazoa / Bilateria / Protostomia / Ecdysozoa / Panarthropoda / Arthropoda / Mandibulata /

... /

Pancrustacea / Hexapoda / Neoptera / Endopterygota / Diptera / Brachycera /

Cyclorrhapha /

Completeness score: 0.87

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

14.1%

This HOG has 9144 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0513739	Pteriomorphia	4		50.0%	6
HOG:E0792999	Opisthokonta	312		26.3%	4
HOG:E0790244	Metazoa	297		44.4%	4
HOG:E0086763	Oomycota	10		80.0%	4
HOG:E0087534	Oomycota	10		50.0%	4
HOG:E0088383	Oomycota	9		55.6%	4
HOG:E0744155	Euteleostomi	7		42.9%	4
HOG:E0792127	Metazoa	7		71.4%	4
HOG:E0515568	Autobranchia	5		40.0%	4
HOG:E0781776	Eumetazoa	415		84.8%	3
HOG:E0755387	Chordata	318		89.6%	3
HOG:E0793502	Opisthokonta	163		30.1%	3
HOG:E0642572	Arthropoda	81		71.6%	3
HOG:E0643334	Arthropoda	28		46.4%	3
HOG:E0537687	Lophotrochozoa	16		62.5%	3
HOG:E0743133	Euteleostomi	13		23.1%	3
HOG:E0771675	Bilateria	13		76.9%	3
HOG:E0087960	Oomycota	12		66.7%	3
HOG:E0087927	Oomycota	11		36.4%	3
HOG:E0089456	Oomycota	11		100.0%	3
HOG:E0119155	Oligohymenophorea	11		81.8%	3
HOG:E0087200	Oomycota	10		70.0%	3
HOG:E0538224	Lophotrochozoa	10		70.0%	3
HOG:E0088868	Oomycota	9		77.8%	3
HOG:E0120263	Oligohymenophorea	8		50.0%	3

Showing 1 to 25 of 9143 rows rows per page